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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55455328_55458654_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55455328 - 55458654
Intron Length:
3327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CATTTTTTATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTGGTCTGAAAC
Flanking Amino Acid:
SSSVKYSSTSTSRRRPQGSD
Intron Amino Acid Position:
1295

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
36.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
70.3
0.46
1.1
76.3
36.4
Minor 5ss
37.5
-1.4
3.3
56.3
41.9
Minor BPS
52.5
0.06
1.7
63.95
41.5

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339