Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55461406_55465571_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55461406 - 55465571

Intron Length:

4166

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGATCC

5'SS Class:

strong_major

3'SS Sequence:

CATTATTTCCAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCATTTTTAATG

Flanking Amino Acid:

PASTISAREELVQHIPEASL

Intron Amino Acid Position:

1453

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.9

0.96

0.8

78.6

29.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.36

1.1

63.7

41.4

Minor 5ss

39.2

-1.2

51.6

45.1

Minor BPS

65.9

0.36

1.3

62.98

39.9

Associated Gene:

Gene:

CEP170B

Ensembl Gene ID:

ENSAPLG00000016395

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024519

55416964 - 55469302

52339