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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55466638_55467179_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55466638 - 55467179
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAA
U12 Branch Point Sequence:
ATTTTAAGACCT
Flanking Amino Acid:
ENTENLAEKMKILFQNSERT
Intron Amino Acid Position:
1522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
84.2
26.3
Major BPS
78.5
0.71
0.9
69.7
37.1
Major PPT
79.1
0.65
0.9
73
37.4
Minor 5ss
37.7
-1.4
2.7
46.1
36.1
Minor BPS
43.8
-0.3
2.1
69.34
41

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339