About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55468328_55469066_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55468328 - 55469066
Intron Length:
739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTCAT
5'SS Class:
major
3'SS Sequence:
TCTTTTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
GTTCTGCTAATA
Flanking Amino Acid:
ELRRVQKQLEVINAIIDPTG
Intron Amino Acid Position:
1571

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.2
70
42.1
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86.9
0.83
0.7
80.6
31.5
Minor 5ss
30.9
-2.2
3.1
41.2
45.2
Minor BPS
45.5
-0.3
2.2
61.85
38.4

Associated Gene:

Gene:
CEP170B
Ensembl Gene ID:
ENSAPLG00000016395
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024519
55416964 - 55469302
52339
ENSAPLT00000018142
55416964 - 55469302
52339
ENSAPLT00000017113
55416964 - 55469302
52339
ENSAPLT00000025239
55416964 - 55469302
52339