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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55481068_55482833_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55481068 - 55482833
Intron Length:
1766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
GATTCTGTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TAAATCTTACCC
Flanking Amino Acid:
MYQFSGAILML
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
71.2
0.48
1
62.3
44
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
56.7
0.19
1.7
64.95
40.2

Associated Gene:

Gene:
PLD4
Ensembl Gene ID:
ENSAPLG00000016446
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017165
55480617 - 55491916
11300