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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55483037_55483721_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55483037 - 55483721
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTCAG
5'SS Class:
strong_major
3'SS Sequence:
ATTGCACTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATACAA
U12 Branch Point Sequence:
TGCTTCACAATA
Flanking Amino Acid:
EGTNRSNDSCRFELVENVPY
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
70.7
41.1
Major BPS
65.8
0.39
1
73.3
31.3
Major PPT
74.9
0.56
0.9
67.1
38.8
Minor 5ss
33.6
-1.9
2.9
41
45.3
Minor BPS
48.6
-0.1
1.8
60.85
39.4

Associated Gene:

Gene:
PLD4
Ensembl Gene ID:
ENSAPLG00000016446
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017165
55480617 - 55491916
11300