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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55484828_55485210_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55484828 - 55485210
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
TGTATCTAAACT
Flanking Amino Acid:
STDLELLENKGAHVKKINFE
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
84.2
27.6
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
82.7
0.73
0.7
81.5
30.5
Minor 5ss
44.8
-0.6
2.8
61.7
43.1
Minor BPS
64.3
0.53
1.7
81.12
40.4

Associated Gene:

Gene:
PLD4
Ensembl Gene ID:
ENSAPLG00000016446
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017165
55480617 - 55491916
11300