Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55485339_55485512_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55485339 - 55485512

Intron Length:

174

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTCT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTCTTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTGAC

U12 Branch Point Sequence:

GGGGCTGTGACA

Flanking Amino Acid:

ANMDWRSLSQVKEFGAVIYN

Intron Amino Acid Position:

214

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.95

0.8

81.4

33.4

Major BPS

0.22

1.2

52.4

43.3

Major PPT

82.4

0.73

0.8

76.3

32.2

Minor 5ss

46.5

-0.4

2.8

65.7

45.4

Minor BPS

44.3

-0.4

2.1

50.98

Associated Gene:

Gene:

PLD4

Ensembl Gene ID:

ENSAPLG00000016446

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017165

55480617 - 55491916

11300