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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55486218_55487854_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55486218 - 55487854
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCTCTCCACCC
Flanking Amino Acid:
FPTSRFVHPERYWPTIDNAL
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
83.3
29.2
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
84.2
0.77
0.7
78.1
36.2
Minor 5ss
50
0
2.8
73.4
43.4
Minor BPS
46.2
-0.3
2.1
62.86
42.9

Associated Gene:

Gene:
PLD4
Ensembl Gene ID:
ENSAPLG00000016446
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017165
55480617 - 55491916
11300