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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55558992_55565287_F

Intron Information:

Intron Rank:
126342
Intron Class:
major
Intron Phase:
Intron Coordinates:
55558992 - 55565287
Intron Length:
6296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGGGTAGG
5'SS Class:
major
3'SS Sequence:
TTTCCCTATCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAG
U12 Branch Point Sequence:
GTTTCCCTATCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.7
0.44
1.1
61.7
44.4
Major BPS
63.7
0.34
1.5
63.4
44
Major PPT
81.4
0.71
0.8
73.9
35.7
Minor 5ss
30.7
-2.2
3
36.9
40.8
Minor BPS
60.9
0.32
2
76.28
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023487
55558961 - 55571485
12525