Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55568878_55570409_F

Intron Information:

Intron Rank:

126344

Intron Class:

major

Intron Phase:

Intron Coordinates:

55568878 - 55570409

Intron Length:

1532

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTAAGTACC

5'SS Class:

major

3'SS Sequence:

TTTCTTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACCTGAT

U12 Branch Point Sequence:

CTAACCTGATCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.4

0.6

1.1

72.2

37.5

Major BPS

0.5

59.3

39.1

Major PPT

95.4

1.02

0.5

91.9

18.9

Minor 5ss

39.9

-1.1

2.8

57.3

39.7

Minor BPS

49.6

-0

1.8

61.17

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018065

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023487

55558961 - 55571485

12525