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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55568878_55575120_F

Intron Information:

Intron Rank:
126345
Intron Class:
major
Intron Phase:
Intron Coordinates:
55568878 - 55575120
Intron Length:
6243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.2
37.5
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
39.9
-1.1
2.8
57.3
39.7
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018065
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029739
55568200 - 55575719
7520