About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55594107_55594546_F

Intron Information:

Intron Rank:
144038
Intron Class:
major
Intron Phase:
Intron Coordinates:
55594107 - 55594546
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAACTACC
5'SS Class:
major
3'SS Sequence:
CTTGTCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAGAA
U12 Branch Point Sequence:
CTTTCCTTGTCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
71.5
38.5
Major BPS
49.9
-0
1.1
46.7
38.9
Major PPT
72.7
0.51
1
65.7
41
Minor 5ss
42.7
-0.8
2.6
52.7
38.2
Minor BPS
49.7
-0
3.5
77.58
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035508
55593880 - 55595392
1513