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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55616014_55618150_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55616014 - 55618150
Intron Length:
2137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACAGCATT
Flanking Amino Acid:
LQAATGWPWRVTFASSVIFR
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76
0.59
1
69.6
41.6
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
42.6
-0.5
2.2
68.69
41.8

Associated Gene:

Gene:
CLBA1
Ensembl Gene ID:
ENSAPLG00000005947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006158
55615897 - 55627203
11307