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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55618266_55618552_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
55618266 - 55618552
Intron Length:
287

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTTCATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.7
0.85
0.7
85.6
27.4
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
63.9
0.52
1.7
79.18
37.3

Associated Gene:

Gene:
CLBA1
Ensembl Gene ID:
ENSAPLG00000005947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033815
55617104 - 55625910
8807
ENSAPLT00000027911
55617104 - 55627203
10100
ENSAPLT00000017544
55617752 - 55625910
8159