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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55622666_55624211_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55622666 - 55624211
Intron Length:
1546

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAATGAGT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTCAA
U12 Branch Point Sequence:
ATAACCTCAAAC
Flanking Amino Acid:
GIPELMKNQLCIDSGNIWRT
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
68
42.5
Major BPS
64.3
0.36
1
65.6
31.9
Major PPT
83.7
0.76
0.7
77.7
31.1
Minor 5ss
34.2
-1.8
3.3
46.1
44
Minor BPS
55
0.14
1.7
64.91
39.6

Associated Gene:

Gene:
CLBA1
Ensembl Gene ID:
ENSAPLG00000005947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029851
55617104 - 55626761
9658
ENSAPLT00000027911
55617104 - 55627203
10100
ENSAPLT00000017544
55617752 - 55625910
8159
ENSAPLT00000006158
55615897 - 55627203
11307
ENSAPLT00000033815
55617104 - 55625910
8807