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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55625719_55626674_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
55625719 - 55626674
Intron Length:
956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TGGATCATACTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCCTTCCTAATT
Flanking Amino Acid:
NNCKALIQTKLTHTWSFGRS
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
57.4
0.17
1
49.3
43.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
61.4
0.44
1.7
75.59
41.9

Associated Gene:

Gene:
CLBA1
Ensembl Gene ID:
ENSAPLG00000005947
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029851
55617104 - 55626761
9658