Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55659373_55659492_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55659373 - 55659492

Intron Length:

120

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATTAAGG

5'SS Class:

major

3'SS Sequence:

TCGGTACTTATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACCTAAC

U12 Branch Point Sequence:

TTGAACCTAACC

Flanking Amino Acid:

GEEDIEGTLAANTVRQIQEE

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

63.6

0.32

1.1

53.6

43.1

Major BPS

63.2

0.33

63.6

30.5

Major PPT

0.43

0.9

Minor 5ss

39.2

-1.2

2.8

46.3

43.8

Minor BPS

53.8

0.1

1.9

69.32

41.5

Associated Gene:

Gene:

CDCA4

Ensembl Gene ID:

ENSAPLG00000002218

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036407

55658398 - 55665964

7567