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Intron Name: Anas_platyrhynchos_platyrhynchos_5_55838904_55841745_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55838904 - 55841745

Intron Length:

2842

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTTC

5'SS Class:

strong_major

3'SS Sequence:

ATTTGCCCTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

GTTCCATTAACT

Flanking Amino Acid:

ETIVVGNSSSDYLVPILCAV

Intron Amino Acid Position:

1178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

30.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

73.2

0.52

0.9

63.9

38.7

Minor 5ss

41.3

-1

3.3

58.3

46.6

Minor BPS

73.2

0.81

1.6

88.23

35.8

Associated Gene:

Gene:

JAG2

Ensembl Gene ID:

ENSAPLG00000004118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021404

55838262 - 55904696

66435

ENSAPLT00000004372

55838262 - 55904696

66435

ENSAPLT00000027918

55838262 - 55904696

66435