About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55843715_55845425_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55843715 - 55845425
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTATT
5'SS Class:
major
3'SS Sequence:
TCTGAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTGTTCTGAATT
Flanking Amino Acid:
CLDGRIDCTKVWCGKKPCLL
Intron Amino Acid Position:
1000

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
83.7
34.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
71.9
0.49
0.9
62.6
43.1
Minor 5ss
40.3
-1.1
3.2
59.8
44.7
Minor BPS
71.6
0.76
1.4
84.27
36.8

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435