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Intron Name: Anas_platyrhynchos_platyrhynchos_5_55845542_55845714_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55845542 - 55845714

Intron Length:

173

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTCTA

5'SS Class:

major

3'SS Sequence:

TTTCTTTCTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CAGTAAC

U12 Branch Point Sequence:

GTGTCAGTAACT

Flanking Amino Acid:

PGRVGPRCQEVIGIGKPCWL

Intron Amino Acid Position:

961

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

72.5

38.4

Major BPS

54.4

0.11

1.2

36.4

Major PPT

88.3

0.86

0.6

85.2

22.2

Minor 5ss

-0.7

2.8

45.4

Minor BPS

54.2

0.21

2.3

78.01

43.9

Associated Gene:

Gene:

JAG2

Ensembl Gene ID:

ENSAPLG00000004118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027918

55838262 - 55904696

66435

ENSAPLT00000021404

55838262 - 55904696

66435

ENSAPLT00000004372

55838262 - 55904696

66435