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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55848672_55849686_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55848672 - 55849686
Intron Length:
1015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTATTTTTTACA
Flanking Amino Acid:
QNTNDCNPHPCYNGGICVDG
Intron Amino Acid Position:
894

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92
0.94
0.7
87.7
29.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
65.1
0.47
1.6
75.19
35.9

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435