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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55853923_55854187_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55853923 - 55854187
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTGCT
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GGATTCTTATGG
Flanking Amino Acid:
KDHCKNNSCKVIDSCTIEVF
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.8
38
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
84.1
0.77
0.6
84.3
23.6
Minor 5ss
34.3
-1.8
3.4
51
45.4
Minor BPS
46.7
-0.3
1.9
49.29
44.2

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435