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Intron Name: Anas_platyrhynchos_platyrhynchos_5_55854339_55856612_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55854339 - 55856612

Intron Length:

2274

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCCA

5'SS Class:

strong_major

3'SS Sequence:

GTCTCTCTTACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAATGAA

U12 Branch Point Sequence:

TCTCTCTTACAG

Flanking Amino Acid:

AQGFSGVFCEMDIDFCEPNP

Intron Amino Acid Position:

627

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

0.9

68.4

38.2

Major BPS

58.9

0.22

49.8

35.1

Major PPT

82.5

0.73

0.8

32.6

Minor 5ss

25.6

-2.8

30.5

42.8

Minor BPS

49.7

-0.1

1.8

57.38

44.1

Associated Gene:

Gene:

JAG2

Ensembl Gene ID:

ENSAPLG00000004118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027918

55838262 - 55904696

66435

ENSAPLT00000021404

55838262 - 55904696

66435

ENSAPLT00000004372

55838262 - 55904696

66435