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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55856787_55857051_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55856787 - 55857051
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TTTTTGTTCATT
Flanking Amino Acid:
GQCQHGGTCKDEVNGYHCLC
Intron Amino Acid Position:
569

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1.1
81.8
38.5
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
81.8
0.71
0.7
77.3
24.7
Minor 5ss
45.7
-0.5
2.9
67.7
43.2
Minor BPS
53.5
0.19
2.4
82.74
39.5

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435