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Intron Name: Anas_platyrhynchos_platyrhynchos_5_55857099_55858267_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55857099 - 55858267

Intron Length:

1169

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

ATTTTATCCATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

CTTATTTTATCC

Flanking Amino Acid:

QQWIGATCQLDINDCHGQCQ

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.4

1.12

0.6

90.5

20.4

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

75.6

0.58

0.8

70.5

34.6

Minor 5ss

-1.6

2.7

44.9

43.2

Minor BPS

55.7

0.16

1.6

65.97

40.2

Associated Gene:

Gene:

JAG2

Ensembl Gene ID:

ENSAPLG00000004118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027918

55838262 - 55904696

66435