Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55858382_55858926_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

55858382 - 55858926

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTGGGTATG

5'SS Class:

major

3'SS Sequence:

TCTGACTTCACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TCTGACTTCACA

Flanking Amino Acid:

SGWSGPTCAIDIDECASNPC

Intron Amino Acid Position:

477

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

70.5

41.3

Major BPS

90.4

0.7

90.2

19.3

Major PPT

75.1

0.56

0.9

68.2

37.2

Minor 5ss

32.6

-2

3.1

38.2

41.2

Minor BPS

52.2

0.06

2.1

67.79

44.7

Associated Gene:

Gene:

JAG2

Ensembl Gene ID:

ENSAPLG00000004118

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027918

55838262 - 55904696

66435

ENSAPLT00000004372

55838262 - 55904696

66435