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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55861357_55861736_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
55861357 - 55861736
Intron Length:
380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAAC
5'SS Class:
major
3'SS Sequence:
TTTCTCTGTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ACCCTATTAATT
Flanking Amino Acid:
TNWGGLLCNKDLNYCGNHHP
Intron Amino Acid Position:
399

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
74.4
35.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
83.7
0.76
0.9
77
37.2
Minor 5ss
35
-1.7
2.9
45.5
42.6
Minor BPS
51.7
0.13
1.6
64.23
40.6

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435