About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55861868_55872122_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
55861868 - 55872122
Intron Length:
10255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTACATCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TAACTTTTAACA
Flanking Amino Acid:
HGGCSTPGECKCHYGWQGQF
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.81
0.9
75.5
40.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
66.9
0.38
0.9
63.5
37.1
Minor 5ss
39.5
-1.2
3
50.7
39.9
Minor BPS
67.9
0.56
1.2
70.62
34.9

Associated Gene:

Gene:
JAG2
Ensembl Gene ID:
ENSAPLG00000004118
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027918
55838262 - 55904696
66435
ENSAPLT00000021404
55838262 - 55904696
66435
ENSAPLT00000004372
55838262 - 55904696
66435