About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55980831_55994332_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55980831 - 55994332
Intron Length:
13502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
SCIDLTSASENGTKKFWDFM
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
74.2
37
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
49.7
-0
2.4
66.6
38.9
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
NUDT14
Ensembl Gene ID:
ENSAPLG00000003998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004098
55945624 - 55994434
48811