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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_55980831_56008815_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
55980831 - 56008815
Intron Length:
27985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
LRPFRLCYRQNGTKKFWDFM
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
NUDT14
Ensembl Gene ID:
ENSAPLG00000003998
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004094
55945624 - 56008896
63273