About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56031898_56033136_F

Intron Information:

Intron Rank:
123747
Intron Class:
major
Intron Phase:
Intron Coordinates:
56031898 - 56033136
Intron Length:
1239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCTGAAT
5'SS Class:
major
3'SS Sequence:
TGTCCCTCAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAA
U12 Branch Point Sequence:
TCACCATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
67.7
38.7
Major BPS
61.8
0.29
1.1
69.7
35.6
Major PPT
71.8
0.49
0.9
67
34
Minor 5ss
27.5
-2.6
3.3
39.4
46.1
Minor BPS
67
0.61
1.6
80
41.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016729
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017321
56030101 - 56033582
3482