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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56206267_56208572_R

Intron Information:

Intron Rank:
152013
Intron Class:
major
Intron Phase:
Intron Coordinates:
56206267 - 56208572
Intron Length:
2306

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
80
29.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.63
0.9
78.2
35
Minor 5ss
26.1
-2.7
2.9
29.9
43.2
Minor BPS
64.3
0.53
1.5
79.64
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029351
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037748
56205031 - 56209439
4409