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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56254396_56255242_R

Intron Information:

Intron Rank:
134109
Intron Class:
major
Intron Phase:
Intron Coordinates:
56254396 - 56255242
Intron Length:
847

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGAC
5'SS Class:
major
3'SS Sequence:
CCTAATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GCTTTCCTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
36.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
73.9
0.54
0.9
65.2
40.7
Minor 5ss
32
-2.1
3.3
43.6
44.1
Minor BPS
62.4
0.47
1.7
76.83
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019431
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046814
56254234 - 56267442
13209