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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56404615_56405963_R

Intron Information:

Intron Rank:
133440
Intron Class:
major
Intron Phase:
Intron Coordinates:
56404615 - 56405963
Intron Length:
1349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TAGGCCTCAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.6
33.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.1
0.75
0.8
76.8
37.1
Minor 5ss
28.1
-2.5
3
34.6
41.4
Minor BPS
61
0.32
1.7
67.92
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019058
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021251
56404458 - 56406020
1563