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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56478084_56478180_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56478084 - 56478180
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TGTCATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTTTGTCATCT
Flanking Amino Acid:
ENADYLKEQKEKEARIAKEK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.5
1.12
0.6
90.6
20.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
81
0.7
0.9
77.4
36.6
Minor 5ss
36.3
-1.6
3.3
49
47.2
Minor BPS
48.8
-0
2.4
79.56
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010609
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011088
56435426 - 56504614
69189