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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56478263_56480507_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
56478263 - 56480507
Intron Length:
2245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GATTTCTGAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
86.8
0.83
0.7
85.5
29.2
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
59.5
0.29
1.5
67.77
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010609
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011088
56435426 - 56504614
69189