Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56501734_56504480_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

56501734 - 56504480

Intron Length:

2747

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTCTATAAA

5'SS Class:

weak_major

3'SS Sequence:

GTCTGTATTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTAAAAT

U12 Branch Point Sequence:

TTGTCTGTATTG

Flanking Amino Acid:

GVFANFTKDGKVNMLWSQSL

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

55.2

0.12

1.3

62.9

37.1

Major BPS

70.6

0.51

1.1

75.9

34.4

Major PPT

76.4

0.59

0.9

69.7

40.3

Minor 5ss

37.6

-1.4

2.6

41.9

39.1

Minor BPS

-0.3

2.2

58.25

44.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000025913

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036775

56501589 - 56517192

15604