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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56599157_56600437_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
56599157 - 56600437
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCCTTTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATTTTCATACAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.1
24.2
Major BPS
100
1.24
0.5
100
0
Major PPT
77.3
0.61
0.7
72.3
25.9
Minor 5ss
35.8
-1.6
2.8
40.3
40.1
Minor BPS
47.5
-0.3
2
59.66
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016761
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042562
56557615 - 56600627
43013