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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56617235_56618232_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
3UTR
Intron Coordinates:
56617235 - 56618232
Intron Length:
998

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTAGTAG
5'SS Class:
weak_major
3'SS Sequence:
TTTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAAAAT
U12 Branch Point Sequence:
TTCTGCTAGATA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.4
0.22
1.2
53.7
39.7
Major BPS
62.8
0.32
1.1
67.9
34.4
Major PPT
90.4
0.91
0.6
85.3
22
Minor 5ss
37.9
-1.4
3.1
46.7
48.8
Minor BPS
49
-0
2.1
65.45
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011285
56616870 - 56634419
17550