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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56619984_56620069_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56619984 - 56620069
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAGAC
U12 Branch Point Sequence:
TTTTCTTTCAAG
Flanking Amino Acid:
DADAVRLPWQRQAQAKHPPI
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
52.7
0.07
1
50.4
34.3
Major PPT
77.4
0.62
1
75.7
38.5
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
61
0.2
1.9
72.3
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019127
56616870 - 56634419
17550
ENSAPLT00000018774
56616870 - 56632991
16122
ENSAPLT00000041994
56616870 - 56635647
18778
ENSAPLT00000011285
56616870 - 56634419
17550
ENSAPLT00000030292
56601926 - 56634419
32494
ENSAPLT00000027220
56616870 - 56635647
18778