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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56620267_56622594_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
56620267 - 56622594
Intron Length:
2328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
GTGTTTTCAATT
Flanking Amino Acid:
SLQKDWNFFEGFYNFCSYVA
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
73.7
0.53
0.9
71.9
38.3
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
58.8
0.35
1.5
72.07
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011285
56616870 - 56634419
17550
ENSAPLT00000030292
56601926 - 56634419
32494
ENSAPLT00000027220
56616870 - 56635647
18778
ENSAPLT00000019127
56616870 - 56634419
17550
ENSAPLT00000018774
56616870 - 56632991
16122
ENSAPLT00000041994
56616870 - 56635647
18778