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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56631001_56631904_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56631001 - 56631904
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTAT
5'SS Class:
strong_major
3'SS Sequence:
ACCTTTCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
CTACCTTTCATT
Flanking Amino Acid:
ERMLPSSAVMGNKQLDEFLM
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
76.7
34.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72
0.5
0.9
70.4
34.7
Minor 5ss
47.5
-0.2
2.5
57.9
46.7
Minor BPS
53.2
0.18
1.8
69.65
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018774
56616870 - 56632991
16122
ENSAPLT00000011285
56616870 - 56634419
17550
ENSAPLT00000030292
56601926 - 56634419
32494
ENSAPLT00000027220
56616870 - 56635647
18778
ENSAPLT00000019127
56616870 - 56634419
17550