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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56631975_56632093_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
56631975 - 56632093
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATACTAT
U12 Branch Point Sequence:
TTTTCGAGGATA
Flanking Amino Acid:
HEYVTLDDVKYVALLLKEEE
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
81.4
26.2
Major BPS
53.3
0.08
1.3
52.9
42.3
Major PPT
83.2
0.75
0.9
80.2
37.3
Minor 5ss
32
-2.1
2.7
37.8
40.1
Minor BPS
45.6
-0.3
2.4
68
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019127
56616870 - 56634419
17550
ENSAPLT00000018774
56616870 - 56632991
16122
ENSAPLT00000041994
56616870 - 56635647
18778
ENSAPLT00000011285
56616870 - 56634419
17550
ENSAPLT00000030292
56601926 - 56634419
32494
ENSAPLT00000027220
56616870 - 56635647
18778