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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56632992_56634249_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56632992 - 56634249
Intron Length:
1258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
CACTCTCTATTT
Flanking Amino Acid:
KDDTNTLEFASSSPASQENL
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
83.3
0.75
0.8
80.9
29.5
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
46.6
-0.1
1.9
61.02
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010843
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027220
56616870 - 56635647
18778
ENSAPLT00000019127
56616870 - 56634419
17550
ENSAPLT00000011285
56616870 - 56634419
17550
ENSAPLT00000041994
56616870 - 56635647
18778
ENSAPLT00000030292
56601926 - 56634419
32494