Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56634315_56635638_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

56634315 - 56635638

Intron Length:

1324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTGTC

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAC

U12 Branch Point Sequence:

TGACATGTAACC

Flanking Amino Acid:

MTSTIKLTSGVWY

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.4

0.79

0.9

76.1

33.6

Major BPS

71.3

0.53

1.2

63.1

44.5

Major PPT

89.8

0.89

0.7

84.9

29.9

Minor 5ss

32.3

-2

3.3

44.3

43.6

Minor BPS

46.1

-0.3

2.1

58.6

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000010843

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041994

56616870 - 56635647

18778

ENSAPLT00000027220

56616870 - 56635647

18778