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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56658948_56669604_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56658948 - 56669604
Intron Length:
10657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCATGGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCTTGCATT
Flanking Amino Acid:
LHNDMHKGMASSEIGTSKLL
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
74.4
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
70.3
0.46
1
66.2
39.5
Minor 5ss
43.9
-0.7
2.8
58.1
46.5
Minor BPS
61
0.43
1.9
84.4
36.8

Associated Gene:

Gene:
ZBTB1
Ensembl Gene ID:
ENSAPLG00000001073
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001055
56658911 - 56680718
21808