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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56685592_56686249_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56685592 - 56686249
Intron Length:
658

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAACGA
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
ATGTACTTAATC
Flanking Amino Acid:
CSWPSPKWFCSECIKIQPAD
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1
57.6
41.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
83
0.74
0.9
80.5
37
Minor 5ss
36.8
-1.5
3.1
48.2
47.3
Minor BPS
69.6
0.6
1.5
73.82
37

Associated Gene:

Gene:
ZBTB25
Ensembl Gene ID:
ENSAPLG00000016857
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020466
56683400 - 56687387
3988