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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56724092_56724763_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56724092 - 56724763
Intron Length:
672

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCT
5'SS Class:
major
3'SS Sequence:
CTCTTTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATAAACT
Flanking Amino Acid:
NQLTLKMPVPSDIEISRSCI
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
68.9
41.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.7
84.7
23.2
Minor 5ss
33.5
-1.9
3.4
48.9
46.7
Minor BPS
60.6
0.41
1.9
82.01
39.1

Associated Gene:

Gene:
MTHFD1
Ensembl Gene ID:
ENSAPLG00000010974
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034039
56702227 - 56742156
39930
ENSAPLT00000011526
56705240 - 56742156
36917