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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_56799562_56805703_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
56799562 - 56805703
Intron Length:
6142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTCTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAACA
Flanking Amino Acid:
RPVESVLPVTRETLKRKTNG
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.2
0.72
0.8
81.9
28.4
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
71.5
0.67
1.5
83.69
29.9

Associated Gene:

Gene:
ESR2
Ensembl Gene ID:
ENSAPLG00000011895
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012415
56799128 - 56830218
31091